| 2012 |
I. Siekmann, J. Sneyd, E.J. Crampin
MCMC can detect non-identifiable models
Biophysical Journal 103 (11), 2275-2286, 2012
K. Patterson, M. Catalán, J. Melvin, D. Yule, E.J. Crampin, J. Sneyd
A Quantitative Analysis of Electrolyte Exchange in the Salivary Duct
American Journal of Physiology, Gastrointestinal and Liver Physiology, doi:10.1152/ajpgi.00364.2011
J.-C. Han, A.J. Taberner, K. Tran, S. Goo, D.P.
Nickerson, M.P. Nash, P.M.F. Nielsen, E.J. Crampin, D.S
Loiselle
Comparison of the Gibbs and Suga Formulations of Cardiac
Energetics: the Demise of 'Isoefficiency'
Journal of Applied
Physiology, doi:10.1152/japplphysiol.00693.2011
L. Bachtiar, C. Unsworth, R. Newcomb, E.J. Crampin
Multi-Layer Perceptron
Classification of Unknown Volatile Chemicals from the Firing Rates of
Insect Olfactory Sensory Neurons and its Application to Biosensor Design
Neural Computation, doi:10.1162/NECO_a_00386
J.-C. Han, A.J. Taberner, K. Tran, D.P. Nickerson, M.P. Nash, P.M.F. Nielsen, E.J. Crampin, D.S. Loiselle
Relating
Components of Pressure-Volume Area in Suga's Formulation of Cardiac
Energetics to Components of the Stress-Time Integral
Journal of Applied Physiology, doi:10.1152/japplphysiol.00438.2012
I. Siekmann, L.E. Wagner II, D. Yule, E.J. Crampin, J. Sneyd
A kinetic model for type I and II IP3R accounting for mode changes
Biophysical Journal 103 (4), 658–668, 2012
J.-C. Han, K. Tran, A.J. Taberner, D.P. Nickerson, R.S. Kirton, P.M.F.
Nielsen, M.-L. Ward, M.P. Nash, E.J. Crampin, D.S. Loiselle
Myocardial twitch duration and the dependence of oxygen consumption on pressure-volume area: experiments and modelling
Journal of Physiology doi:10.1113/jphysiol.2012.228965
L. Palk, J. Sneyd, K. Patterson, T.J. Shuttleworth, D.I. Yule, O. Maclaren, E.J. Crampin
Modelling the effects of calcium waves and oscillations on saliva secretion
Journal of Theoretical Biology 305, 45-53, 2012
L.
Wang, D. Hurley, W. Watkins, H. Araki, Y. Tamada, A. Muthukaruppan, L.
Ranjard, E. Derkac, S. Imoto, S. Miyano, E.J. Crampin, C. Print
Cell Cycle Gene Networks Are Associated With Melanoma Prognosis
PLoS ONE 7(4): e34247 doi:10.1371/journal.pone.0034247
O. Maclaren, J. Sneyd, E.J. Crampin
Efficiency of primary saliva secretion: an analysis of parameter
dependence in dynamic single-cell and acinus models, with application
to aquaporin knockout studies
Journal of Membrane Biology 245 (1) 29-50, 2012
|
| 2011 |
D.
Hurley, H. Araki, Y. Tamada, B. Dunmore, D. Sanders, S. Humphreys, M.
Affara, S. Imoto, K. Yasuda, Y. Tomiyasu, K. Tashiro, C. Savoie, V.
Cho, S. Smith, S. Kuhara, S. Miyano, S. Charnock-Jones*, E.J. Crampin*,
C. Print*
Gene Network Inference and Visualisation Tools for Biologists: Application to New Human Transcriptome Datasets
Nucleic Acids Research doi:10.1093/nar/GKR902 *joint senior authors
M.A. Mourão, J. Srividhya, P.E. McSharry, E.J. Crampin, S. Schnell
A Graphical User Interface for a Method to Infer Kinetics and Network Architecture (MIKANA)
PLoS ONE 6(11): e27534 doi:10.1371/journal.pone.0027534
H. Araki, D. Hurley, E.J. Crampin, C. Print, S. Kuhara
Gene Network Analysis and Application
Seibutsu Butsuri (Biophysics) 51, 182-185, 2011 (in Japanese)
E.J. Crampin
Point:Counterpoint: Muscle lactate and H+ production do / do not have a 1:1 association in skeletal muscle
Journal of Applied Physiology 110 (5), 1495, 2011
I. Siekmann, L.E. Wagner II, D. Yule, C. Fox, D. Bryant, E.J. Crampin, J. Sneyd
MCMC estimation of Markov models for ion channels
Biophysical Journal 100 (8), 1919-1929, 2011
D. Waltemath, R. Adams, D. Beard, F. Bergmann, U. Bhalla, R. Britten,
V. Chelliah, M. Cooling, J. Cooper, E.J. Crampin, A. Garny, S. Hoops,
M. Hucka, P. Hunter, E. Klipp, C. Laibe, A. Miller, I. Moraru, D.
Nickerson, P. Nielsen, M. Nikolski, S. Sahle, H. Sauro, H. Schmidt, J.
Snoep, D. Tolle, O. Wolkenhauer, N. Le Novère
Minimum Information About a Simulation Experiment (MIASE)
PLoS Computational Biology 7(4): e1001122, 2011
M.
Fink, S.A. Niederer, E.M. Cherry, F.H. Fenton, J.T. Koivumaki, G.
Seemann, R. Thul, H. Zhang, F.B. Sachse*, D.A. Beard*, E.J. Crampin*, N.P.
Smith*
Cardiac
cell modelling: Observations from the heart of the cardiac physiome
project
Progress in Biophysics
& Molecular Biology 104 (1-3), 2-21, 2011 *joint senior authors
L. R.
Bachtiar, C. P. Unsworth, R. D. Newcomb, E.J. Crampin
Using Artificial
Neural Networks to Classify Unknown Volatile Chemicals from the Firings
of Insect Olfactory Sensory Neurons
Engineering in Medicine and Biology Society (EMBC), 2011
L. R. Bachtiar, C. P. Unsworth, R. D. Newcomb, E. J. Crampin
Predicting Odorant Chemical Class from Odorant Descriptor Values With
an Assembly of Multi-Layer Perceptrons
Engineering in Medicine and Biology Society (EMBC), 2011
|
| 2010 |
A.K. Miller, C.G. Print, P.M.F. Nielsen, E.J. Crampin
A Bayesian Search for Transcriptional Motifs
PLoS ONE 5(11): e13897. doi:10.1371/journal.pone.0013897
N.J. Warren, E.J.
Crampin, M.H. Tawhai
The
role of airway epithelium in replenishment of evaporated airway surface
liquid from the human conducting airways
Annals of Biomedical
Engineering 38 (12), 3535-3549, 2010
L. Palk, J. Sneyd,
T.J. Shuttleworth, D.I. Yule, E.J. Crampin
A
dynamic model of saliva secretion
Journal of Theoretical
Biology 266, 625-640, 2010
P. Kohl, E.J.
Crampin, T.A. Quinn, D. Noble
Systems
Biology: an Approach
Clinical Pharmacology
& Therapeutics 88 (1), 25-33, 2010
N. Warren, M.H.
Tawhai, E.J. Crampin
The
effect of intracellular calcium oscillations on fluid secretion in
airway epithelium
Journal of Theoretical
Biology 265, 270-277, 2010
D. Loiselle, K. Tran,
E.J. Crampin, N. Curtin
Why
has Reversal of the Actin-Myosin Cross-Bridge Cycle Not Been Observed
Experimentally?
Journal of Applied
Physiology 108, 1465-1471, 2010
K. Tran,
N.P. Smith, D.S. Loiselle, E.J. Crampin
A
metabolite-sensitive, thermodynamically-constrained model of cardiac
cross-bridge cycling: Implications for force development during ischemia
Biophysical
Journal 98, 267-276, 2010
J.
Srividhya, M.A. Mourão, E.J. Crampin,
S. Schnell
Enzyme
catalyzed reactions: from experiments to computational mechanism
reconstruction
Computational
Biology & Chemistry 34, 11–18, 2010
N.J.
Warren, M.H. Tawhai, E.J. Crampin
Mathematical
modelling of calcium wave propagation in airway epithelium: Evidence
for regenerative ATP release
Experimental
Physiology
95, 232-249, 2010
A. Sher, M. Cooling, B. Bethwaite, J. Tan, T. Peachey, C. Enticott, S. Garic, D. Gavaghan, D. Noble, D. Abramson, E.J. Crampin.
A Global Sensitivity Tool for Cardiac Cell Modeling: Application to Ionic Current Balance and Hypertrophic Signaling
Engineering in Medicine and Biology Society (EMBC), 2010
J. Cursons, D. Hurley, C.E. Angel, R. Dunbar, E.J. Crampin, M.D. Jacobs.
Inference of an in Situ Epidermal Intracellular Signaling Cascade
Engineering in Medicine and Biology Society (EMBC), 2010
|
| 2009 |
S.M.
Wimalaratne, M.D.B. Halstead,
C.M. Lloyd, M.T. Cooling, E.J. Crampin, P.F. Nielsen
A
method for visualizing CellML models
Bioinformatics
25, 3012-3019, 2009
M.T.
Cooling, P.J. Hunter, E.J. Crampin
Physiome
Mark-up Languages for Systems Biology: Model Modularization and Reuse
In E.T.
Liu, D.A. Lauffenburger
(Eds.), Systems
Biomedicine: Concepts and Perspectives, Elsevier
S.M.
Wimalaratne, M.D.B. Halstead, C.M. Lloyd, E.J. Crampin, P.F. Nielsen
Biophysical
annotation and representation of CellML models
Bioinformatics 25,
2263-2270, 2009
N.J.
Warren, M.H. Tawhai, E.J. Crampin
A
Mathematical Model of Calcium-Induced Fluid Secretion in Airway
Epithelium
Journal of
Theoretical Biology 259 (4), 837-849, 2009
S.M.
Wimalaratne, M.D.B. Halstead, C.M. Lloyd, M.T. Cooling, E.J. Crampin,
P.F. Nielsen
Facilitating
modularity and reuse: Guidelines for structuring CellML 1.1 models by
isolating common biophysical concepts
Experimental Physiology 94 (5), 472-485,
2009
M.T.
Cooling, P.J. Hunter, E.J. Crampin
Sensitivity
of NFAT cycling to cytosolic calcium: Implications for hypertrophic
signalling in cardiac myocytes
Biophysical
Journal 96
(6), 2095-2104, 2009
K. Tran,
N.P. Smith, D.S. Loiselle, E.J. Crampin
A
thermodynamic model of the cardiac sarcoplasmic/endoplasmic Ca2+
(SERCA) pump
Biophysical
Journal 96
(5), 2029-2042, 2009
Correction
|
2008
|
P.J. Hunter,
E.J. Crampin, P.M.F. Nielsen
Bioinformatics, multiscale modeling and the IUPS Physiome Project
Briefings in
Bioinformatics 9
(4), 333-343, 2008
D.S.
Loiselle, E.J. Crampin, S.A. Niederer, N.P. Smith, C.J. Barclay
Energetic
consequences of mechanical loads
Progress in
Biophysics and Molecular Biology 97, 348-366, 2008
J.
Terkildsen, S.A. Niederer, E.J. Crampin, P.J. Hunter, N.P. Smith
Using
Physiome standards to couple cellular functions for cardiac
excitation-contraction
Experimental
Physiology 93
(7), 919-929, 2008
M. Cooling,
P.J. Hunter, E.J. Crampin
Modelling
biological modularity with CellML
IET Systems
Biology 2
(2), 73-79, 2008
|
| 2007 |
J.
Terkildsen, E.J. Crampin, N.P. Smith
The
balance between inactivation and activation of the Na+-K+ pump
underlies the triphasic accumulation of extracellular K+ ions during
myocardial ischemia
American
Journal of Physiology, Heart and Circulatory Physiology 293,
H3036-H3045,
2007
M.
Cooling, P.J. Hunter, E.J. Crampin
Modelling
hypertrophic IP3 transients in the cardiac myocyte
Biophysical
Journal 93,
3421-3433, 2007
E. Gin,
E.J.
Crampin, D.A. Brown, T.J. Shuttleworth, D.I. Yule,
J. Sneyd
A
mathematical model of fluid secretion from a parotid acinar cell
Journal of
Theoretical Biology 248,
64-80, 2007
N.P. Smith,
E.J.
Crampin, S.A. Niederer, J.B. Bassingthwaighte, D.A. Beard
Computational
biology of cardiac myocytes: Proposed standards for the Physiome
Journal of
Experimental Biology 210
(9), 1576-1583, 2007
J.
Srividhya,
E.J. Crampin, P.E. McSharry, S. Schnell
Reconstructing
biochemical pathways from time course data
Proteomics 7,
828-838, 2007
|
| 2006 |
J.
Wildenhain,
E.J. Crampin
Reconstructing
gene regulatory networks: from random to scale-free connectivity
IEE Proc. Systems Biology 153
(4), 247-256, 2006
E.J.
Crampin
System
Identification
Challenges from Systems Biology
Proc. 14th IFAC Symposium on System
Identification,
Newcastle,
Australia, pp. 81-93, 2006
I. Barrass,
E.J.
Crampin, P.K. Maini
Mode
transitions in a model reaction-diffusion system driven by domain
growth and noise
Bulletin of Mathematical Biology 68
(5), 981-995, 2006
E.J.
Crampin,
N.P. Smith
A
dynamic
model of excitation-contraction coupling during acidosis in cardiac
ventricular myocytes
Biophysical Journal 90,
3074-3090, 2006
Supplementary
Information
E.J.
Crampin,
N.P. Smith, A.E. Langham, R.H. Clayton, C.H.
Orchard
Acidosis
in models of cardiac ventricular myocytes
Philosophical Transactions of the Royal Society A
364
(1842), 1171-1186, 2006
|
| 2005 |
N. Le
Novere, A. Finney, M. Hucka, U. Bhalla, F. Campagne, J.
Collado-Vides, E.J. Crampin, M. Halstead, E. Klipp, P. Mendes, P.
Nielsen, H. Sauro, B. Shapiro, J.L. Snoep, H.D. Spence, B.L. Wanner
Minimum
information requested in the annotation of biological models (MIRIAM)
Nature Biotechnology 23
(12), 1509-1515, 2005
|
| 2004 |
E.J.
Crampin,
P.E. McSharry, S. Schnell
Extracting
biochemical reaction kinetics from time series data
Lecture Notes in A.I. 3214,
329-336, 2004
E.J.
Crampin,
N.P. Smith, P.J. Hunter
Multi-scale
modelling and the IUPS Physiome Project
Journal of Molecular Histology 35
(7), 707-714, 2004
E.J.
Crampin, S.
Schnell, P.E. McSharry
Mathematical
and computational techniques to deduce complex biochemical reaction
mechanisms
Progress in Biophysics & Molecular Biology
86 (1),
77-112, 2004
E.J.
Crampin, S.
Schnell
New
approaches
to modelling and analysis of biochemical reactions, pathways and
networks
Progress in Biophysics & Molecular Biology
86 (1),
1-4, 2004
(Editorial)
Invited guest editor with S. Schnell:
table of contents can be found here
N.P. Smith,
D.P.
Nickerson, E.J. Crampin, P.J. Hunter
Multiscale
Computational Modelling of the Heart
Acta Numerica 13,
371-431, 2004
N.P. Smith,
E.J.
Crampin
Development
of
models of active ion transport for whole-cell modelling: Cardiac
sodium-potassium pump as a case study
Progress in Biophysics & Molecular Biology
85 (2-3),
387-405, 2004
N.P. Smith,
E.J.
Crampin
Modelling
Cellular and Tissue Function
Progress in Biophysics & Molecular Biology
85 (2-3),
117-119, 2004
(Editorial)
Invited guest editor with N.P. Smith:
table of contents can be found here
E.J.
Crampin, M.
Halstead, P. Hunter, P. Nielsen, D. Noble, N.
Smith, M. Tawhai
Computational
Physiology and the Physiome Project
Experimental Physiology 89
(1), 1-26, 2004
|
| 2003 |
P.K. Maini,
E.J.
Crampin, A. Madzvamuse, A.J. Wathen, R.D.K.
Thomas
Implications
of
domain growth in morphogenesis
In Mathematical Modelling & Computing in
Biology and Medicine, V. Cappasso (Ed.), Proceedings 5th
ECMTB Conference 2002,
pp
67-73, 2003
|
| 2002 |
E.J.
Crampin,
W.W. Hackborn, P.K. Maini
Pattern
formation in reaction-diffusion models with nonuniform domain growth
Bulletin of Mathematical Biology 64
(4), 747-769, 2002
E.J.
Crampin,
E.A. Gaffney, P.K. Maini
Mode
doubling and tripling in reaction-diffusion patterns on growing
domains: A piecewise linear model
Journal of Mathematical Biology 44
(2), 107-128, 2002
|
| 2001 |
E.J.
Crampin,
P.K. Maini
Reaction-diffusion
models for biological pattern formation
Methods and Applications of Analysis 8
(2), 415-428, 2001
E.J.
Crampin,
P.K. Maini
Modelling
biological pattern formation: The role of domain growth
Comments on Theoretical Biology 6
(3), 229-249, 2001
|
| 1999 |
E.J.
Crampin,
E.A. Gaffney, P.K. Maini
Reaction
and diffusion on growing domains: Scenarios for robust pattern formation
Bulletin of Mathematical Biology 61
(6), 1093-1120, 1999
|
| 1997 |
C.
Nguyen-van-Huong, E.J. Crampin, J.-Y. Laval, A. Dubon
Incorporation
of silver in DyBa2Cu3O7-d ceramics. Correlation between superconducting
properties and microstructure
Superconductor Science and Technology 10
(2), 85-94, 1997
|
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